PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007229-PA
Common NameOsI_05629
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 551aa    MW: 58217.4 Da    PI: 4.4495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007229-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12287330755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       e+Er+RR+++N  + +Lr+l+P+      +K++ a+iL  A++YI  Lq
  BGIOSGA007229-PA 287 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 330
                       89*********************7.....7***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.18E-13279341No hitNo description
PROSITE profilePS5088815.37280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-18281352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9287330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14287342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MGRGDHLLMK NSNAAAAAAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG  60
FCCSSELEAQ VSALLDLPSS IPLDSSSIGM HAQALLSNQP IWQSSSEEEE ADGGGGAKTR  120
LLVPVAGGLV ELFASRYMAE EQQMAELVMA QCGGGGAGDD GGGQAWPPPE TPSFQWDGGA  180
DAQRLMYGGS SLNLFDAAAA DDDPFLGGGG DAVGDAAAAA GAWPYAGMAV SEPSVAVAQE  240
QMQHAAGGGV AESGSEGRKL HGGDPEDDGD GEGRSGGAKR QQCKNLEAER KRRKKLNGHL  300
YKLRSLVPNI TKMDRASILG DAIDYIVGLQ KQVKELQDEL EDNHVHHKPP DVLIDHPPPA  360
SLVGLDNDDA SPPNSHQQQP PLAVSGSSSR RSNKDPAMTD DKVGGGGGGG HRMEPQLEVR  420
QVQGNELFVQ VLWEHKPGGF VRLMDAMNAL GLEVINVNVT TYKTLVLNVF RVMVRDSEVA  480
VQADRVRDSL LEVTRETYPG VWPSPQEEDD AKFDGGDGGQ AAAAEAAAGG EHYHDEVGGG  540
YHQHLHYLAF D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288295ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.500000.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379892030.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195800.0AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625730.10.0PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotQ6YUS30.0TDR_ORYSJ; Transcription factor TDR
TrEMBLB8AGK60.0B8AGK6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA007229-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-50bHLH family protein